November 2005 Archives by thread

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Starting: Tue Nov 1 17:57:29 EST 2005
Ending: Wed Nov 30 23:22:04 EST 2005
Messages: 202

• [Bioperl-guts-l] [Bug 1889] New: Matrix::Generic method remove_row needs to remap rows   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Graphics Panel.pm,1.106,1.107   Lincoln Stein
• [Bioperl-guts-l] [Bug 1891] New: Implement a seqgen wrapper in bioperl-run   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] CVSROOT loginfo,1.15,1.16   Jason Stajich
• [Bioperl-guts-l] [Bug 1892] New: Implement an arp (Arlequin/Simcoal2) parser in Bio::AlignIO   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Tools RepeatMasker.pm,1.4,1.5   Jason Stajich
• [Bioperl-guts-l] [Bug 1893] New: Bio::Structure::Entry some methods missing arguments in pod   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1894] New: Bio::Structure::Entry conect method dies with no atom connections   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1895] New: Bio::Structure::IO::pdb missing and extra TER records   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature Generic.pm,1.92,1.93   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio SeqFeatureI.pm,1.60,1.61   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio AnnotatableI.pm,1.8,1.9   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio AnnotatableI.pm,1.9,1.10   Brian Osborne
• [Bioperl-guts-l] [Bug 1896] New: Implement a bioperl-run::Bio::Tools::Run::Phylo::PAML::Evolver module   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/PAML Codeml.pm, 1.38, 1.39   Albert Vilella
• [Bioperl-guts-l] bioperl-live/doc/howto/txt Feature-Annotation.txt, 1.12, 1.13   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/html Feature-Annotation.html, 1.14, 1.15   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/pdf Feature-Annotation.pdf, 1.13, 1.14   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml Feature-Annotation.xml, 1.8, 1.9   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/AlignIO phylip.pm,1.32,1.33   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/AlignIO fasta.pm,1.19,1.20   Jason Stajich
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Phylip Base.pm, 1.8, 1.9 Consense.pm, 1.10, 1.11 DrawGram.pm, 1.10, 1.11 DrawTree.pm, 1.8, 1.9 Neighbor.pm, 1.23, 1.24 ProtDist.pm, 1.26, 1.27 ProtPars.pm, 1.20, 1.21   Jason Stajich
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/PAML Codeml.pm, 1.39, 1.40   Jason Stajich
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo LVB.pm,1.4,1.5   Jason Stajich
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Molphy ProtML.pm, 1.10, 1.11   Jason Stajich
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run EMBOSSApplication.pm, 1.20, 1.21   Jason Stajich
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Alignment Clustalw.pm, 1.43, 1.44   Jason Stajich
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run Genewise.pm,1.22,1.23   Jason Stajich
• [Bioperl-guts-l] bioperl-run/Bio/Factory EMBOSS.pm,1.2,1.3   Jason Stajich
• [Bioperl-guts-l] bioperl-run README,1.7,1.8   Jason Stajich
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/PAML Codeml.pm, 1.40, 1.41 Yn00.pm, 1.19, 1.20   Jason Stajich
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/PAML Baseml.pm, 1.3, 1.4   Jason Stajich
• [Bioperl-guts-l] [Bug 1898] New: seg parser   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/doc/howto/xml Feature-Annotation.xml, 1.9, 1.10   Brian Osborne
• [Bioperl-guts-l] [Bug 1898] seg parser   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Tools Seg.pm,1.7,1.8   Brian Osborne
• [Bioperl-guts-l] [OTAnn] Feedback   shenanigans
• [Bioperl-guts-l] bioperl-ext/Bio/Ext/Align/libs dpalign.c, 1.2, 1.3 dpalign.h, 1.5, 1.6   Yee Man Chan
• [Bioperl-guts-l] bioperl-live/t SeqFeature.t,1.38,1.39   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature Annotated.pm, 1.26, 1.27   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature Annotated.pm, 1.27, 1.28   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t/data mapmaker.txt, NONE, 1.1 unigene.data, 1.8, 1.9   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t MapIO.t,1.3,1.4   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/MapIO mapmaker.pm,1.6,1.7   Brian Osborne
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/PAML Evolver.pm, NONE, 1.1   Albert Vilella
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph arrow.pm, 1.25, 1.26 line.pm, 1.5, 1.6 primers.pm, 1.6, 1.7   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/MapIO mapmaker.pm,1.7,1.8   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/DB/GFF/Adaptor memory.pm, 1.41, 1.42   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB GFF.pm,1.133,1.134   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics Panel.pm,1.107,1.108   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB GFF.pm,1.134,1.135   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/t BioDBGFF.t,1.39,1.40   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/t/data/biodbgff test.gff3,NONE,1.1   Lincoln Stein
• [Bioperl-guts-l] [Bug 1893] Bio::Structure::Entry some methods missing arguments in pod   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Structure Entry.pm,1.18,1.19   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph image.pm,NONE,1.1   Lincoln Stein
• [Bioperl-guts-l] [Bug 1830] strange dashes on the negative axis when using xyplot   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Structure Entry.pm,1.19,1.20   Brian Osborne
• [Bioperl-guts-l] [Bug 1894] Bio::Structure::Entry conect method dies with no atom connections   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Structure Entry.pm,1.20,1.21   Brian Osborne
• [Bioperl-guts-l] [Bug 1900] New: Bio::Matrix::PSM::IO::mast generates wrong matched sequence   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1900] Bio::Matrix::PSM::IO::mast generates wrong matched sequence   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t StructIO.t,1.4,1.5   Brian Osborne
• [Bioperl-guts-l] [Bug 1895] Bio::Structure::IO::pdb missing and extra TER records   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Structure/IO pdb.pm,1.12,1.13   Brian Osborne
• [Bioperl-guts-l] [Bug 1900] Bio::Matrix::PSM::IO::mast generates wrong matched sequence   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Matrix/PSM/IO mast.pm,1.13,1.14   Stefan Kirov
• [Bioperl-guts-l] [Bug 1901] New: Zero-based starting position in mast parser   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/doc/howto/html Feature-Annotation.html, 1.15, 1.16   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/pdf Feature-Annotation.pdf, 1.14, 1.15   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/txt Feature-Annotation.txt, 1.13, 1.14   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml Feature-Annotation.xml, 1.10, 1.11   Brian Osborne
• [Bioperl-guts-l] [Bug 1901] Zero-based starting position in mast parser   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Matrix/PSM/IO mast.pm,1.14,1.15   Stefan Kirov
• [Bioperl-guts-l] bioperl-live/Bio/Matrix/PSM InstanceSite.pm, 1.10, 1.11   Stefan Kirov
• [Bioperl-guts-l] bioperl-live/Bio/PopGen Statistics.pm,1.28,1.29   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/DB GFF.pm,1.132.2.1,1.132.2.2   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/DB/GFF/Adaptor memory.pm, 1.41, 1.41.2.1   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO exonerate.pm,1.14,1.15   Jason Stajich
• [Bioperl-guts-l] [Bug 1707] Out of memory crash from Bio::DB::GFF::Adaptor::dbi::pg.pm (Postgres)   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1823] TreeIO::nhx doesn't write internal node labels to nhx file   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1823] TreeIO::nhx doesn't write internal node labels to nhx file   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1823] TreeIO::nhx doesn't write internal node labels to nhx file   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1823] TreeIO::nhx doesn't write internal node labels to nhx file   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/TreeIO nhx.pm,1.13,1.14   Jason Stajich
• [Bioperl-guts-l] [Bug 1823] TreeIO::nhx doesn't write internal node labels to nhx file   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO kegg.pm,1.12,1.13   Brian Osborne
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/PAML Evolver.pm, 1.1, 1.2   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/PAML Evolver.pm, 1.2, 1.3   Albert Vilella
• [Bioperl-guts-l] bioperl-live/t kegg.t,1.1,1.2   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO kegg.pm,1.13,1.14   Brian Osborne
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/PAML Evolver.pm, 1.3, 1.4   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/PAML Evolver.pm, 1.4, 1.5   Albert Vilella
• [Bioperl-guts-l] [Bug 1904] New: MAST parser handles the boundary of section I erroneously   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1905] New: MAST parser handles the boundary of section I erroneously   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1905] MAST parser handles the boundary of section I erroneously   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Matrix/PSM/IO mast.pm,1.15,1.16   Stefan Kirov
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/PAML Evolver.pm, 1.5, 1.6   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/PAML Evolver.pm, 1.6, 1.7   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/PAML Evolver.pm, 1.7, 1.8   Albert Vilella
• [Bioperl-guts-l] [Bug 1906] New: multiple restriction digests issue   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-run/Bio/Factory EMBOSS.pm,1.3,1.4   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run EMBOSSApplication.pm, 1.21, 1.22 EMBOSSacd.pm, 1.5, 1.6   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live FAQ,1.52,1.53   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio DBLinkContainerI.pm, 1.9, 1.10 Range.pm, 1.23, 1.24 RangeI.pm, 1.39, 1.40 SeqUtils.pm, 1.19, 1.20 SimpleAlign.pm, 1.96, 1.97 WebAgent.pm, 1.6, 1.7   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Align AlignI.pm,1.11,1.12   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/AlignIO largemultifasta.pm, 1.6, 1.7 metafasta.pm, 1.2, 1.3 nexus.pm, 1.24, 1.25   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Biblio Article.pm, 1.11, 1.12 Book.pm, 1.11, 1.12 BookArticle.pm, 1.10, 1.11 Journal.pm, 1.10, 1.11 JournalArticle.pm, 1.11, 1.12 MedlineArticle.pm, 1.9, 1.10 MedlineBook.pm, 1.7, 1.8 MedlineBookArticle.pm, 1.7, 1.8 MedlineJournal.pm, 1.7, 1.8 MedlineJournalArticle.pm, 1.7, 1.8 Organisation.pm, 1.11, 1.12 Patent.pm, 1.11, 1.12 Person.pm, 1.12, 1.13 Proceeding.pm, 1.10, 1.11 Provider.pm, 1.8, 1.9 Ref.pm, 1.9, 1.10 Service.pm, 1.10, 1.11 TechReport.pm, 1.9, 1.10 Thesis.pm, 1.9, 1.10 WebResource.pm, 1.10, 1.11   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Coordinate Chain.pm, 1.2, 1.3 Collection.pm, 1.20, 1.21 ExtrapolatingPair.pm, 1.11, 1.12 GeneMapper.pm, 1.23, 1.24 Graph.pm, 1.6, 1.7 MapperI.pm, 1.6, 1.7 Pair.pm, 1.15, 1.16 Result.pm, 1.10, 1.11 ResultI.pm, 1.2, 1.3 Utils.pm, 1.12, 1.13   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Coordinate/Result Gap.pm, 1.5, 1.6 Match.pm, 1.5, 1.6   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/DB BioFetch.pm, 1.24, 1.25 DBFetch.pm, 1.9, 1.10 EMBL.pm, 1.17, 1.18 MeSH.pm, 1.3, 1.4 RefSeq.pm, 1.9, 1.10 SwissProt.pm, 1.23, 1.24   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/DB/Biblio biofetch.pm,1.7,1.8   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Factory ApplicationFactoryI.pm, 1.6, 1.7   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Graphics ConfiguratorI.pm, 1.4, 1.5   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/LiveSeq AARange.pm, 1.11, 1.12 Chain.pm, 1.14, 1.15 ChainI.pm, 1.12, 1.13 DNA.pm, 1.10, 1.11 Exon.pm, 1.9, 1.10 Gene.pm, 1.14, 1.15 Intron.pm, 1.8, 1.9 Mutation.pm, 1.8, 1.9 Mutator.pm, 1.28, 1.29 Prim_Transcript.pm, 1.8, 1.9 Range.pm, 1.8, 1.9 Repeat_Region.pm, 1.8, 1.9 Repeat_Unit.pm, 1.8, 1.9 SeqI.pm, 1.27, 1.28 Transcript.pm, 1.19, 1.20 Translation.pm, 1.14, 1.15   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/LiveSeq/IO BioPerl.pm, 1.18, 1.19 Loader.pm, 1.17, 1.18 SRS.pm, 1.10, 1.11   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Location Simple.pm,1.37,1.38   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Phenotype/MeSH Term.pm, 1.3, 1.4 Twig.pm, 1.3, 1.4   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Restriction Analysis.pm, 1.11, 1.12 Enzyme.pm, 1.10, 1.11 EnzymeCollection.pm, 1.5, 1.6 EnzymeI.pm, 1.2, 1.3 IO.pm, 1.5, 1.6   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Map CytoMap.pm, 1.4, 1.5 CytoMarker.pm, 1.4, 1.5 CytoPosition.pm, 1.6, 1.7 LinkageMap.pm, 1.11, 1.12 LinkagePosition.pm, 1.10, 1.11 MapI.pm, 1.7, 1.8 MappableI.pm, 1.10, 1.11 Marker.pm, 1.13, 1.14 MarkerI.pm, 1.10, 1.11 Microsatellite.pm, 1.8, 1.9 OrderedPosition.pm, 1.5, 1.6 OrderedPositionWithDistance.pm, 1.5, 1.6 Position.pm, 1.10, 1.11 PositionI.pm, 1.9, 1.10 SimpleMap.pm, 1.10, 1.11   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Restriction/Enzyme MultiCut.pm, 1.3, 1.4 MultiSite.pm, 1.3, 1.4   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Restriction/IO bairoch.pm, 1.2, 1.3 base.pm, 1.6, 1.7 itype2.pm, 1.2, 1.3 withrefm.pm, 1.3, 1.4   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Seq LargeSeqI.pm, 1.3, 1.4 Meta.pm, 1.7, 1.8 MetaI.pm, 1.6, 1.7 Quality.pm, 1.6, 1.7   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Seq/Meta Array.pm,1.9,1.10   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO metafasta.pm, 1.4, 1.5 scf.pm, 1.34, 1.35   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Tools CodonTable.pm, 1.31, 1.32 GuessSeqFormat.pm, 1.10, 1.11 Sigcleave.pm, 1.20, 1.21   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Analysis SimpleAnalysisBase.pm, 1.6, 1.7   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Analysis/DNA ESEfinder.pm, 1.6, 1.7   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Variation/IO flat.pm, 1.14, 1.15 xml.pm, 1.15, 1.16   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Analysis/Protein NetPhos.pm, 1.9, 1.10   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/Bio/Variation AAChange.pm, 1.15, 1.16 AAReverseMutate.pm, 1.8, 1.9 Allele.pm, 1.11, 1.12 DNAMutation.pm, 1.13, 1.14 IO.pm, 1.17, 1.18 README, 1.2, 1.3 RNAChange.pm, 1.12, 1.13 SeqDiff.pm, 1.18, 1.19 VariantI.pm, 1.15, 1.16   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/doc/faq faq.html, 1.22, 1.23 faq.xml, 1.49, 1.50   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/doc/howto/html OBDA_Access.html, 1.9, 1.10   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/doc/howto/txt OBDA_Access.txt, 1.5, 1.6   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/doc/howto/xml OBDA_Access.xml, 1.4, 1.5   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/examples/db dbfetch,1.1,1.2   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/maintenance authors.pl, 1.3, 1.4 modules.pl, 1.16, 1.17 pod.pl, 1.6, 1.7   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/scripts/DB biogetseq.PLS, 1.3, 1.4 flanks.PLS, 1.3, 1.4   Heikki Lehvaslaiho
• [Bioperl-guts-l] [Bug 1907] New: SimpleValue: /qualifier="0" becomes /qualifier=""   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Annotation SimpleValue.pm, 1.14, 1.15   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/t Annotation.t,1.13,1.14   Heikki Lehvaslaiho
• [Bioperl-guts-l] [Bug 1907] SimpleValue: /qualifier="0" becomes /qualifier=""   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/PAML Evolver.pm, 1.8, 1.9   Albert Vilella
• [Bioperl-guts-l] [Bug 1906] multiple restriction digests issue   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Restriction Analysis.pm, 1.12, 1.13   Brian Osborne
• [Bioperl-guts-l] [Bug 1904] MAST parser handles the boundary of section I erroneously   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Matrix/PSM/IO mast.pm,1.16,1.17   Brian Osborne
• [Bioperl-guts-l] [Bug 1889] Matrix::Generic method remove_row needs to remap rows   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1904] MAST parser handles the boundary of section I erroneously   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/AlignIO nexus.pm,1.25,1.26   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO hmmer.pm,1.29,1.30   Aaron J Mackey
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO kegg.pm,1.14,1.15   Allen Day
• [Bioperl-guts-l] bioperl-live/Bio/Graphics Feature.pm,1.42,1.43   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/scripts/Bio-DB-GFF bulk_load_gff.PLS, 1.33, 1.34 fast_load_gff.PLS, 1.22, 1.23 load_gff.PLS, 1.12, 1.13   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/TreeIO newick.pm,1.30,1.31   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tree Node.pm,1.41,1.42   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tree NodeI.pm,1.31,1.32   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/AlignIO fasta.pm,1.20,1.21   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/AlignIO phylip.pm,1.33,1.34   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tree Node.pm,1.42,1.43   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tree Node.pm,1.43,1.44   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/TreeIO newick.pm,1.31,1.32   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Matrix Generic.pm,1.6,1.7   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Matrix Generic.pm,1.7,1.8   Brian Osborne
• [Bioperl-guts-l] Need help with SeqFeature.generic.pm   Haizhou Tang
• [Bioperl-guts-l] [Bug 1908] New: new lines in SeqIO::interpro.pm   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1908] new lines in SeqIO::interpro.pm   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t/data interpro_ebi.xml,NONE,1.1   Brian Osborne
• [Bioperl-guts-l] [Bug 1908] new lines in SeqIO::interpro.pm   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t interpro.t,1.2,1.3   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO interpro.pm,1.5,1.6   Brian Osborne
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/PiseApplication phyml.pm, NONE, 1.1 Puzzle.pm, 1.3, 1.4   Catherine Letondal
• [Bioperl-guts-l] bioperl-live/Bio TreeIO.pm,1.16,1.17   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/TreeIO nhx.pm,1.14,1.15   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/TreeIO newick.pm,1.32,1.33   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tree NodeNHX.pm,1.7,1.8   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tree TreeFunctionsI.pm,1.22,1.23   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tree Tree.pm,1.15,1.16   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t StructIO.t,1.5,1.6   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t StructIO.t,1.6,1.7   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t StandAloneBlast.t,1.24,1.25   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Tools RepeatMasker.pm,1.5,1.6   Brian Osborne
• [Bioperl-guts-l] bioperl-live INSTALL.WIN,1.17,1.18   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/html Feature-Annotation.html, 1.16, 1.17   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/pdf Feature-Annotation.pdf, 1.15, 1.16   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/txt Feature-Annotation.txt, 1.14, 1.15   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml Beginners.xml, 1.9, 1.10 Feature-Annotation.xml, 1.11, 1.12   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/pdf Feature-Annotation.pdf, 1.16, 1.17   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml Feature-Annotation.xml, 1.12, 1.13   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml README,1.4,1.5   Brian Osborne
• [Bioperl-guts-l] bioperl-live/doc/howto/xml/stylesheet e-novative.xsl, 1.1, 1.2   Brian Osborne
• [Bioperl-guts-l] [Bug 1910] New: StandAloneBlast - patch for rpsblast support   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 1910] StandAloneBlast - patch for rpsblast support   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] blastall question   Moti Zviling
• [Bioperl-guts-l] [Bug 1910] StandAloneBlast - patch for rpsblast support   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Run StandAloneBlast.pm, 1.51, 1.52   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/PopGen Statistics.pm,1.29,1.30   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/DB GFF.pm,1.135,1.136   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/GFF/Adaptor/dbi mysql.pm, 1.61, 1.62   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics Panel.pm,1.108,1.109   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph arrow.pm, 1.26, 1.27   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/t StandAloneBlast.t,1.25,1.26   Brian Osborne

Last message date: Wed Nov 30 23:22:04 EST 2005
Archived on: Thu Dec 1 13:27:24 EST 2005

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