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	Fri, 24 Jun 2005 21:33:46 BST
Date: Fri, 24 Jun 2005 21:33:46 +0100 (BST)
From: madhuri battu <madhuri_battu@yahoo.co.in>
Subject: Re: Bio::DB::BioDB
To: =?iso-8859-1?q?Heikki=20Lehv=E4slaiho?= <heikki@ebi.ac.uk>
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Hi,
  I loaded the whole Bioperl through cvs and i tried
to run load_seqdatabase.pl script on my machine and i
am getting the following errors

Could not store NM_000014: Operation `ne': no method
found,
        left argument in overloaded package
Bio::Annotation::Reference,
        right argument has no overloaded magic at
/usr/lib/perl5/site_perl/5.8.0/Bio/DB/Persistent/PersistentObject.pm
line534, <GEN0> line 581.

Can you please help me in this matter.
Thanks,
Madhuri.
--- Heikki Lehvaslaiho <heikki@ebi.ac.uk> wrote:

> Madhuri,
> 
> It should work from CVS. I've forwarded your message
> to the bioperl mailing 
> list (bioperl-l@bioperl.org). Please further queries
> and more detailed 
> problem reports there.
> 
> If you have downloaded bioperl-db from CVS, you need
> to add its root directory  
> to your PERL5LIB environmental variable. 
> 
>
PERL5LIB=/home/heikki/src/bioperl/core:/home/heikki/src/bioperl/db
> 
> More generic bioperl install instructions can be
> found at:
>
http://www.ebi.ac.uk/~lehvasla/bioperl/InstallingBioperl.html
> 
> 
>  -Heikki
> 
> On Thursday 23 June 2005 19:47, madhuri battu wrote:
> > Hi,
> >   My name is Madhuri Battu. I am working at UT
> > Southwestern in US as an intern. I have a problem
> with
> > installing Bio::DB::BioDB. It was saying it is 5
> years
> > old on downloads page and recently updated on View
> cvs
> > page. Can you please tell whether the module is
> being
> > used and how can i install it. If this module is
> not
> > being used what module can be used in place of
> that.
> > Thanks,
> > Madhuri.
> >
> >
> >
> >
> >
> >
> >
>
__________________________________________________________
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> -- 
> ______ _/     
>
_/_____________________________________________________
>       _/      _/                     
> http://www.ebi.ac.uk/mutations/
>      _/  _/  _/  Heikki Lehvaslaiho    heikki at_ebi
> _ac _uk
>     _/_/_/_/_/  EMBL Outstation, European
> Bioinformatics Institute
>    _/  _/  _/  Wellcome Trust Genome Campus, Hinxton
>   _/  _/  _/  Cambridge, CB10 1SD, United Kingdom
>      _/      Phone: +44 (0)1223 494 644   FAX: +44
> (0)1223 494 468
> ___
>
_/_/_/_/_/________________________________________________________
> 



		
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