hmmpfam - search one or more sequences against HMM database 
HMMER 2.3.2 (Oct 2003) 
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine 
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /usr/local/lib/pfam-tm
Sequence file:            Mus_musculus.NCBIM34.jul.pep.fa-short
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -


Query sequence: ENSMUSP00000020094
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LRR_1    Leucine Rich Repeat                             55.0    3.7e-15   6
LRRNT    Leucine rich repeat N-terminal domain           30.1    1.1e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LRRNT      1/1     117   142 ..     1    34 []    30.1  1.1e-07
LRR_1      1/6     168   191 ..     1    25 []    14.7   0.0049
LRR_1      2/6     192   210 ..     1    25 []     9.1      0.2
LRR_1      3/6     212   237 ..     1    25 []     8.4     0.26
LRR_1      4/6     238   257 ..     1    25 []    10.3      0.1
LRR_1      5/6     259   282 ..     1    25 []    10.1     0.12
LRR_1      6/6     290   314 ..     1    25 []     2.4        2
//

Query sequence: ENSMUSP00000074175
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CUB      CUB domain                                     232.5    1.3e-68   2
Trypsin  Trypsin                                        206.0    1.2e-60   1
Sushi    Sushi domain (SCR repeat)                       88.7    2.6e-25   2
EGF_CA   Calcium binding EGF domain                      29.4    1.8e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CUB        1/2      16   137 ..     1   116 []    70.0  1.1e-19
EGF_CA     1/1     141   188 ..     1    55 []    29.4  1.8e-07
CUB        2/2     192   301 ..     1   116 []   162.5  1.5e-47
Sushi      1/2     308   370 ..     1    62 []    47.5  6.5e-13
Sushi      2/2     375   446 ..     1    62 []    41.2  5.1e-11
Trypsin    1/1     463   698 ..     1   259 []   206.0  1.2e-60
//