BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Bacteriophage_1[M19348] (371 letters) Database: month.aa 108,489 sequences; 37,052,082 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_037061.1| procollagen, type II, alpha 1 [Rattus norvegicus] 47 6e-05 ref|XP_193814.5| PREDICTED: similar to collagen, type XXII, alph... 43 0.001 ref|XP_912463.1| PREDICTED: similar to collagen, type XXII, alph... 43 0.001 ref|XP_619329.2| PREDICTED: hypothetical protein LOC69700 isofor... 43 0.001 >ref|NP_037061.1| procollagen, type II, alpha 1 [Rattus norvegicus] Length = 1419 Score = 46.6 bits (109), Expect = 6e-05 Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 28 EGEIGFETDTGFAKFGDGQNTFSKLKYLTGPKGPKGDTGLQGKTGGTGPRGPAGKPGTTD 87 +GE G + G G F+ L+ L GP GP GD G G G +GPRGP G G + Sbjct: 1050 KGEAGEPGERGLK----GHRGFTGLQGLPGPPGPSGDQGTSGPAGPSGPRGPPGPVGPSG 1105 Query: 88 YD 89 D Sbjct: 1106 KD 1107 >ref|XP_193814.5| PREDICTED: similar to collagen, type XXII, alpha 1 isoform 1 [Mus musculus] Length = 537 Score = 42.7 bits (99), Expect = 0.001 Identities = 22/45 (48%), Positives = 23/45 (51%), Gaps = 6/45 (13%) Query: 57 GPKGPKGDTGL------QGKTGGTGPRGPAGKPGTTDYDQLQNKP 95 GPKG KGD G QG G GPRGP G PG +D Q P Sbjct: 320 GPKGEKGDPGEPGALGPQGHPGELGPRGPIGPPGAKGHDGAQGPP 364 >ref|XP_912463.1| PREDICTED: similar to collagen, type XXII, alpha 1 isoform 3 [Mus musculus] Length = 1625 Score = 42.7 bits (99), Expect = 0.001 Identities = 22/45 (48%), Positives = 23/45 (51%), Gaps = 6/45 (13%) Query: 57 GPKGPKGDTGL------QGKTGGTGPRGPAGKPGTTDYDQLQNKP 95 GPKG KGD G QG G GPRGP G PG +D Q P Sbjct: 866 GPKGEKGDPGEPGALGPQGHPGELGPRGPIGPPGAKGHDGAQGPP 910 >ref|XP_619329.2| PREDICTED: hypothetical protein LOC69700 isoform 2 [Mus musculus] Length = 1435 Score = 42.7 bits (99), Expect = 0.001 Identities = 22/45 (48%), Positives = 23/45 (51%), Gaps = 6/45 (13%) Query: 57 GPKGPKGDTGL------QGKTGGTGPRGPAGKPGTTDYDQLQNKP 95 GPKG KGD G QG G GPRGP G PG +D Q P Sbjct: 676 GPKGEKGDPGEPGALGPQGHPGELGPRGPIGPPGAKGHDGAQGPP 720 Database: month.aa Posted date: Dec 21, 2005 9:00 PM Number of letters in database: 37,052,082 Number of sequences in database: 108,489 Lambda K H 0.309 0.129 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,415,155 Number of Sequences: 108489 Number of extensions: 1078867 Number of successful extensions: 5634 Number of sequences better than 1.0e-03: 4 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 5001 Number of HSP's gapped (non-prelim): 427 length of query: 371 length of database: 37,052,082 effective HSP length: 108 effective length of query: 263 effective length of database: 25,335,270 effective search space: 6663176010 effective search space used: 6663176010 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 99 (42.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Bacteriophage_2[U28144] (337 letters) Database: month.aa 108,489 sequences; 37,052,082 total letters Searching..................................................done ***** No hits found ****** Database: month.aa Posted date: Dec 21, 2005 9:00 PM Number of letters in database: 37,052,082 Number of sequences in database: 108,489 Lambda K H 0.311 0.128 0.350 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,193,569 Number of Sequences: 108489 Number of extensions: 966865 Number of successful extensions: 2118 Number of sequences better than 1.0e-03: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2118 Number of HSP's gapped (non-prelim): 0 length of query: 337 length of database: 37,052,082 effective HSP length: 107 effective length of query: 230 effective length of database: 25,443,759 effective search space: 5852064570 effective search space used: 5852064570 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 99 (42.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= C.elegans_1_[Z49071] (458 letters) Database: month.aa 108,489 sequences; 37,052,082 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_917828.1| PREDICTED: similar to hyaluronoglucosaminidase ... 173 6e-43 gb|AAI10184.1| Unknown (protein for MGC:134590) [Bos taurus] 169 6e-42 >ref|XP_917828.1| PREDICTED: similar to hyaluronoglucosaminidase 4 [Mus musculus] Length = 481 Score = 173 bits (438), Expect = 6e-43 Identities = 122/412 (29%), Positives = 181/412 (43%), Gaps = 48/412 (11%) Query: 40 WMVPSWTCKNEYSIDV-----EKYGILQNEDQHFVGGKQFAIFYEHSFGKIPYFKAQNES 94 W P+ C +Y++ + + G + +D+ G+ IFY + G P++ + E Sbjct: 52 WNAPTDLCLIKYNLTLNLKVFQMVGSPRLKDR----GQNVVIFYANRLGYYPWYTS--EG 105 Query: 95 DPKNGGLPQMGDLEAHLIQAEKDINETIPDENFNGIAVIDIEEFRPMWELSWGPFSVYKT 154 P NGGLPQ L+ HL +A +DIN IP ENF+G+AVID E +RP W +W +Y+ Sbjct: 106 VPINGGLPQNTSLQVHLKKAAQDINYYIPSENFSGLAVIDWEYWRPQWARNWNTKDIYRQ 165 Query: 155 ESIRLTRQQHPYWSTKQIEWQAERDYEKACQKFFIETLRLGKRLRPNAKWGYYLFPKC-N 213 +S L S IE+ A+ +EK+ + F ET++LG + RP WGYYL+P C N Sbjct: 166 KSRTLISDMKENISAADIEYSAKATFEKSAKAFMEETIKLGSKSRPKGLWGYYLYPDCHN 225 Query: 214 GDVGQKSDT-DCSTLFQKFNDNLHWLWGESTALFPSIYLYPSQKQNPEYNFVNSGALITE 272 +V + T C N++L WLW STAL+P++ + S + E S + E Sbjct: 226 YNVYATNYTGSCPEEEVLRNNDLSWLWNSSTALYPAVSIRKSFADS-ENTLHFSRFRVRE 284 Query: 273 TKRIKRNYCPSCEIHVFTKIEYNPYYTPDDFYSKQNLASTLDLAIKMNANSVVIWSTSQS 332 + RI + VF + P F SKQ+L ST+ + + A +V+W Sbjct: 285 SLRISTMTSQDYALPVFVYTQLGYKEEPLLFLSKQDLISTIGESAALGAAGIVVWGDMNL 344 Query: 333 IGS--RCGSLQTYVDNTLGPYLQLTDRNLDKCRMERCEGRGECYLPRPKT------NPAI 384 S C + +V++ G Y+ R + C C+ G C K NPA Sbjct: 345 TSSEENCTKVNRFVNSDFGSYIINVTRAAEVCSRHLCKNNGRCVRKTWKAAHYLHLNPAS 404 Query: 385 Y--------------------------NFACRCERPYFGKSCEYRGRRMGVS 410 Y NF C C Y G C G S Sbjct: 405 YHIEASEDGEFIVRGRASDTDLAVMAENFLCHCYEGYEGADCREMTEASGPS 456 >gb|AAI10184.1| Unknown (protein for MGC:134590) [Bos taurus] Length = 553 Score = 169 bits (429), Expect = 6e-42 Identities = 111/347 (31%), Positives = 177/347 (51%), Gaps = 23/347 (6%) Query: 40 WMVPSWTCKN---EYSIDVEKYGILQNEDQHFVGGKQFAIFYEHSFGKIPYFKAQNESDP 96 W P C N + D+ + + + Q G+ +FY G P+ + Sbjct: 53 WNAPVERCVNRRFQLPPDLRLFSV-KGSPQKSATGQFITLFYADRLGYYPHID-EKTGKT 110 Query: 97 KNGGLPQMGDLEAHLIQAEKDINETIPDENFNGIAVIDIEEFRPMWELSWGPFSVYKTES 156 GG+PQ+G+L++H+ +A+ DI IP+++ G+AVID E +RP W +W P VY+ ES Sbjct: 111 VFGGIPQLGNLKSHMEKAKNDIAYYIPNDSV-GLAVIDWENWRPTWARNWKPKDVYRDES 169 Query: 157 IRLTRQQHPYWSTKQIEWQAERDYEKACQKFFIETLRLGKRLRPNAKWGYYLFPKC-NGD 215 + L Q++P S + A+ D+E A + F ETL+LGK LRPN WGYYLFP C N + Sbjct: 170 VELVLQKNPQLSFPEASKIAKVDFETAGKSFMQETLKLGKLLRPNHLWGYYLFPDCYNHN 229 Query: 216 VGQKS-DTDCSTLFQKFNDNLHWLWGESTALFPSIYLYPSQKQNPEYNFVNSGALITETK 274 Q + + +C + ++ ND+L WLW ESTALFPS+YL N + AL + Sbjct: 230 HNQPTYNGNCPDVEKRRNDDLEWLWKESTALFPSVYL------NIRLKSTQNAALYVRNR 283 Query: 275 ---RIKRNYCPSCEIHVFTKIEYNPYYT--PDDFYSKQNLASTLDLAIKMNANSVVIWST 329 I+ + S E + + P +T + S+ +L +++ + + A+ +++W + Sbjct: 284 VQEAIRLSKIASVESPLPVFVYARPVFTDGSSTYLSQGDLVNSVGEIVSLGASGIIMWGS 343 Query: 330 ---SQSIGSRCGSLQTYVDNTLGPYLQLTDRNLDKCRMERCEGRGEC 373 S S+ S C +L TY++ TL PY+ C C G C Sbjct: 344 LNLSLSMQS-CMNLGTYLNTTLNPYIINVTLAAKMCSQVLCHNEGVC 389 Database: month.aa Posted date: Dec 21, 2005 9:00 PM Number of letters in database: 37,052,082 Number of sequences in database: 108,489 Lambda K H 0.319 0.136 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,687,212 Number of Sequences: 108489 Number of extensions: 1557833 Number of successful extensions: 3012 Number of sequences better than 1.0e-03: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3003 Number of HSP's gapped (non-prelim): 2 length of query: 458 length of database: 37,052,082 effective HSP length: 110 effective length of query: 348 effective length of database: 25,118,292 effective search space: 8741165616 effective search space used: 8741165616 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 100 (43.1 bits)